BIOS 10161 Lecture Notes - Lecture 4: Lightning, Thomas Cech, Sidney Altman

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amaranthcricket286

6 Sep 2016

School

Department

Biological Sciences

Course

BIOS 10161

Professor

Schulz, Robert

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Document Summary

8/31: nucleic acids and the origin of life. Nucleic acids are polymers made up of nucleotides (monomers: specialized for storage, transmission and use of genetic information. Nucleotide made of: nitrogenous base, pentose sugar, and 1-3 phosphate groups. Nucleic acid formation: new nucleotides added to an existing chain one at a time, pentose sugar of last nucleotide and phosphate of new nucleotide undergo a condensation rxn, creating a phosphodiester linkage. Phosphate is attached to the 5" carbon atom of the sugar. Nucleic acids vary in size: oligonucleotides are about 20 nucleotide monomers. Ex: rna primers, synthetic dna used for amplifying and analyzing longer sequences: polynucleotides (called nucleic acid) Base pairing in dna and rna: dna"s four bases: a, t, g, c, rna: u replaces t, dna and rna operate under complementary base pairing. Dna: a & t together (2 hydrogen bonds), g & c together (3 hydrogen bonds)

Related Questions

Multiple answers to each question might be possible!

You decide to identify the CFTR mutation by analyzing the genomic DNA of your patients compared to healthy individuals. You specifically are looking to see whether a specific 3' gene truncation has occurred in the patients. You will determine this using hybridization techniques with samples from healthy and CF patients. Which of the following will allow you to accomplish this?

	Using an RNA probe complementary to the region not removed by the truncation.
	Using an RNA probe complementary to the region removed by the truncation.
	Using an DNA probe complementary to the region not removed by the truncation.
	Using an DNA probe complementary to the region removed by the truncation.

To conduct the hybridization experiment, you are trying to decide between using a DNA or RNA probe. Which would be ideal to use and why?

	As both are composed of nucleic acids, using either would result in identical results.
	An RNA probe because RNA has uracil bases.
	An RNA probe because it could also be used in a translation experiment.
	A DNA probe because it is more stable than RNA.
	A DNA probe because RNA cannot bind to DNA.

One step of the Hershey/Chase experiment involved blending the virus/cell mixture before centrifugation and probing the pellet for radioactivity. Why was the blending step necessary?

	To collect the bacteria at the bottom of the tube.
	To break open the bacteria to release the genome.
	To separate the bacteria from the bacteriophages.
	To be able to detect the radioactivity.

Imagine Hershey/Chase had used an RNA virus (genome composed of RNA) instead of a DNA virus in their experiment. Would radioactivity still have been found in the pellet?

	No, because only DNA can be labeled with radioactivity.
	No, because the RNA genome would not enter the bacteria upon infection.
	No, because while DNA and RNA nucleotides are similar, they are not identical.
	Yes, because DNA and RNA nucleotides are similar.
	Yes, because genome in any form (DNA, RNA, protein) would be labeled similarly.

The human genome consists mostly of non-coding DNA. Which of the following are benefits of this?

	Random DNA mutations generally won't affect RNA and protein function.
	It is faster to duplicate the genome when these are present.
	The existence of introns can lead to multiple variations of proteins encoded by a single gene.
	It is unlikely transposons would exist in the genome if there was too much protein coding DNA.

Explain the 5â to 3â directionality of a DNA stand.

	It is due to the fact that the free 5â carbon is on one end and the free 3â carbon is on the other
	It is due to the fact that new nucleotide are added to the 5â carbon of the previous nucleotide
	It is due to the fact that there are 3 phosphate groups attached to the 5â carbon
	It is due to the fact the complementary strand is 3â to 5â
	More than one of the above explain the 5â to 3â directionality

You accidentally add a mutant dNTP (which has an H instead of an OH connected to the 3â carbon) to a reaction where DNA is being replicated. Which of the following is true of this mutant dNTP?

	It can be incorporated into DNA strand but cannot form a phosphodiester bond with an incoming wild type dNTP
	It can be incorporated into a DNA strand but cannot base pair with a complementary nucleotide
	It can be incorporated into a DNA strand and can form a phosphodiester bond with an incoming dNTP, but only if it is another mutant dNTP
	It cannot be incorporated into a DNA strand.

Why does DNA polymerase utilize an RNA primer?

	DNA polymerase is unable to initiate strand synthesis but RNA polymerase can
	DNA polymerase can only add a dNTP to an rNTP
	DNA synthesis proceeds in the 3â to 5â when initiating strand synthesis
	Chromosomal DNA contains interspersed RNA fragments
	The RNA primer increases stability of the newly synthesized strand

rosehippopotamus950

Question 1

Which of the following provides the best description of adifference between prokaryotic and eukaryotic cells?.l.14.3>

The cell membrane of prokaryotic cells contains proteins, whilethe cell membrane of eukaryotic cells contains only lipids andcarbohydrates.

The DNA in eukaryotic cells is enclosed in the nucleus, whilethe DNA in prokaryotic cells is not separated from the rest of thecellÃ¢â¬â¢s contents.

Eukaryotic cells have cell walls that consist mainly of sugars,while prokaryotic cells do not.

Prokaryotic cells contain chloroplasts and mitochondria, whileeukaryotic cells do not contain specialized organelles.

Question 2

Cellular respiration is a process involving the breakdown ofglucose molecules in order to generate energy for cellularactivities. Given the general reaction below, which of thefollowing best describes the products labeled x andy?

C₆H₁₂O₆ + O₂ Ã¢â â _x___+ __y___ + energy.l.18.8>

The products are CO (carbon monoxide) andH₂O₂ (hydrogen peroxide), which thendecompose into carbon dioxide (CO₂) and water(H₂O).

The products are H2O (water) and CO₂ (carbondioxide), which then undergo anaerobic respiration.

The products are CO₂ (carbon dioxide) andH₂O (water), which then become the reactants forphotosynthesis.

The products are O₂ (oxygen) and H₂O(water), which are then used for growth and to keep the organismhydrated.

Question 3

If a researcher added a quantity of phospholipid molecules to abeaker of water, what would be most likely to happen to theorientation of the phospholipid molecules?.l.14.2>

They would break apart, and the remaining lipid tails wouldfloat up and form a layer on the surface of the water.

Their lipid tails would align within a spherical double layerwith their phosphate heads in the water inside and outside thesphere.

They would form a single-layered sphere with the phosphate headspointing outward and the lipid tails pointing inward.

Their lipid tails would adhere to the glass of the beaker andtheir phosphate heads would float in the water.

Question 4

While looking at a cell under a microscope, a scientist is ableto see a biological molecule. This molecule is a nucleic acid witha ladder structure and contains the nitrogenous bases adenine,thymine, cytosine, and guanine. Based on this information, whatconclusion can the scientist draw regarding this nucleicacid?.l.18.1>

The nucleic acid is RNA and would be found in the cellÃ¢â¬â¢snucleus.

The nucleic acid is RNA and would be found in the cytoplasm.

The nucleic acid is DNA and would be found in the cytoplasm.

The nucleic acid is DNA and would be found in the cellÃ¢â¬â¢snucleus.

Question 5

Which of the following is needed for cellular respiration tooccur?.l.18.8>

Sodium

Oxygen

Water

Nitrogen

Question 6

What would be the most likely effect if the side chain of an aminoacid group was unable to vary its structure?.l.18.4>

The organism would not be able to make and store starches.

The organism would not be able to process glucose moleculeseffectively.

The organism would not be able to regulate the creation ofspecialized cells.

The organism would not be able to make more than one type ofprotein.

Question 7

During photosynthesis, unused oxygen atoms form oxygen gas(O₂) which is released as a waste product. How did theseoxygen atoms originally enter the plant?.l.18.7>

They were part of the ATP molecules gathered by thechloroplasts.

They were part of the sugar molecules(C₆H₁₂O₆) the plant brought in forfood.

They were part of the carbon dioxide (CO₂) moleculesthat entered through the leaves.

They were part of the water molecules (H₂O) pulled inthrough the roots.

Question 8

Which of the following organelles houses DNA in eukaryoticcells?.l.14.3>

Endoplasmic reticulum

Golgi apparatus

Nucleus

Mitochondrium

Question 9

M. J. Schleiden shifted the scientific community's attention tocellular processes with his.l.14.1>

attention to disproving spontaneous generation

publication of ideas on cell generation

theories on the division of cells

claim that cells were the basic unit of all plant matter

Question 10

While the average human is able to hold his or her breath forapproximately one minute, a whale can dive for over 30 minuteswithout returning to the surface. Which of the following correctlydescribes this difference?.l.18.10>

Whales need less energy than humans.

Whales gather energy from their environment better thanhumans.

Whales are able to tolerate the products of cellular respirationbetter than humans.

Whales have a slower cellular respiration metabolism rate thanhumans.

Question 11

What can you conclude about the advantage of the cell membranehaving hydrophobic ends in the phospholipid bilayer?.l.18.3>

The cell requires the ability to digest and eliminateenzymes.

The cell requires a barrier between itself and itsenvironment.

The cell requires a means to store starches and glucose.

The cell requires a structure for eliminating waste.

Question 12

What would be the most likely outcome if the ribosomes of a cellwere damaged and stopped functioning?.l.14.3>

The cell would lose structure and shape.

Cell growth and repair would slow or stop.

Cell waste would no longer be processed.

The cell would produce more mitochondria.

ivoryjackal958

Question 401 pts

Kinetic energy is the stored energy that can be used for motion.

True

False

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Question 411 pts

When an electron is transferred from one atom to another, and the two atoms are then electrically attracted to one another, a(n) ________________ bond is formed.

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Question 421 pts

Changing the number of ____________ of an atom would change the chemical properties of the atom.

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Question 431 pts

Forming molecules and breaking down molecules in biological organisms usually requires the use of _________ to help the reaction proceed faster.

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Question 441 pts

Organic molecules have a core composed of .

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Question 451 pts

The building blocks of carbohydrates are

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Question 461 pts

Water molecules crossing a membrane from high to low concentration is .

active transport

cell fate

facilitated diffusion

osmosis

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Question 471 pts

Choose the membrane molecule responsible for the passage of polar molecules and ions into and out of the cell.

phospholipids

transmembrane channel proteins

cell surface proteins

carbohydrate chains

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Question 481 pts

The simplest cells are .

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Question 491 pts

Which of the following membrane bound organelles are found inside bacterial cells:

nucleus

organelles are not found in prokaryotic cells

mitochondria

chloroplasts

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Question 501 pts

Which of the following is a specialized components of the cell, is associated with the rough endoplasmic reticulum, and is responsible for making proteins.

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Question 511 pts

Proteins are sorted, modified, and packaged by the _____________ and later transported to the outside of the cell.

ribosomes

golgi bodies (golgi apparatus)

nucleus

mitochondria

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Question 521 pts

Dehydration synthesis is a process of linking two smaller subunits together to form a polymer. Which of the following statements below is true of dehydration synthesis?

Oxygen is consumed.

A water molecule is removed from the molecules.

A water molecule is added to the molecules

Carbon dioxide is given off.

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Question 531 pts

Proteins are made up of _________ held together by peptide bonds.

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Question 541 pts

Which of the following gives an amino acid its properties?

NH2

R Group or functional group

COOH

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Question 551 pts

The final three-dimensional shape of a protein that includes the bonding of two or more polypeptide chains is call its _____ structure.

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Question 561 pts

How do DNA and RNA differ?

all statements are differences between DNA and RNA.

DNA is double stranded while RNA is single stranded.

They have different sugars.

Thymine is present in DNA but not in RNA.

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Question 571 pts

Which of the following is a component of a DNA nucleotide?

phosphate

a nitrogen containing base

All are components of a nucleotide.

5-carbon sugar

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Question 581 pts

Cell membranes are made up of several different types of molecules. Select the membrane molecule below that is made up of a polar region and two non-polar fatty acid tails.

transmembrane proteins

carbohydrate chains

phospholipids

cell surface proteins

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Question 591 pts

Two organelles which are believed to have once been free-living bacterial cells are ____________ and ______________.

chloroplasts and mitochondria

golgi apparatus and endoplasmic reticulum

ribosomes and nucleolus

peroxisomes and lysosomes

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