BIOCHEM 420 Chapter Notes - Chapter 5: Carbon Group, Protease, Post-Translational Modification
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Protein Structure
a.Different function of proteins and examples:
b. Protein building blocks:
1. atomic composition of building block:
2. "parts" or "functional groups" of the building block:
c. Importance of side chain (R group):
d. Hydrophobic amino acids characteristics:
e. Hydrophilic amino acids characteristics:
f. Charged amino acids characteristics
Copy and complete the table below regarding the characteristics and which groups in the polypeptide interact together at each structural level of the protein.
characteristics | groups interacting | ||
---|---|---|---|
Primary structure | |||
Secondary structure | |||
Tertiary structure | |||
Quartenary structure |
Value: 2
Choose the correct statement(s). You may choose more than one answer.
[mark all correct answers]
a. Proteins are the building blocks of amino acids.
b. Enzymes are a type of protein.
c. Quartenary structure consists of two or more polypeptide chains interacting.
d. Amino acids are made of carbon, hydrogen, nitrogen and phosphorus.
e. The primary structure of a protein is formed due to the interaction of side groups.
Value: 3
Put the following statements regarding the structural levels of a protein formation in the correct order.
Below is a sequence of events. Place them in the order they should occur, number 1 being the first item. Select the step number from the drop down next to each item.
Items to order:
1. Individual amino acids are bonded together via peptide bonds.
2. Two or more polypeptide chains interact via bonds.
3. Hydrogen bonds form between neighboring amino acids within a polypeptide chain allowing the chain to coil or form pleated sheets.
4. Side groups (R) of the individual amino acids interact with each other allowing the protein to assume its three dimensional shape.
Value:4
Put the following statements regarding the structural levels of a protein formation in the correct order
Individual amino acids are bonded together via peptide bonds. | 1 2 3 4 |
Two or more polypeptide chains interact via bonds. | 1 2 3 4 |
Hydrogen bonds form between neighboring amino acids within a polypeptide chain allowing the chain to coil or form pleated sheets. | 1 2 3 4 |
Side groups (R) of the individual amino acids interact with each other allowing the protein to assume its three dimensional shape. | 1 2 3 4 |
Value: 5
Hydrophobic amino acids will be found _______________.
a. In the interior (inner core) of a protein, away from the watery environment.
b. in the interior of a plasma membrane.
c. Both A and B
d. Neither
Value: 6
A protein's function is defined by ____________.
a. enzymatic reactions
b. it's shape.
c. chain of nucleotides.
d. the presence of carbon and hydrogen.
Value: 7
Which of the following is NOT considered a protein function?
a. transport of substances across membrane
b. enzymatic reactions
c. provides structural support
d. carries genetic information
Question 401 pts
Kinetic energy is the stored energy that can be used for motion.
True |
False |
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Question 411 pts
When an electron is transferred from one atom to another, and the two atoms are then electrically attracted to one another, a(n) ________________ bond is formed.
ionic |
kinetic |
covalent |
hydrogen |
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Question 421 pts
Changing the number of ____________ of an atom would change the chemical properties of the atom.
neutrons |
protons |
electrons |
electron shells |
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Question 431 pts
Forming molecules and breaking down molecules in biological organisms usually requires the use of _________ to help the reaction proceed faster.
oil |
heat |
enzymes |
blood |
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Question 441 pts
Organic molecules have a core composed of .
carbon |
nitrogen |
phosphorus |
hydrogen |
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Question 451 pts
The building blocks of carbohydrates are
polypeptides |
amino acids |
nucleotides |
monosaccharides |
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Question 461 pts
Water molecules crossing a membrane from high to low concentration is .
active transport |
cell fate |
facilitated diffusion |
osmosis |
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Question 471 pts
Choose the membrane molecule responsible for the passage of polar molecules and ions into and out of the cell.
phospholipids |
transmembrane channel proteins |
cell surface proteins |
carbohydrate chains |
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Question 481 pts
The simplest cells are .
prokaryotic |
animal cells |
eukaryotic |
cells of fungi |
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Question 491 pts
Which of the following membrane bound organelles are found inside bacterial cells:
nucleus |
organelles are not found in prokaryotic cells |
mitochondria |
chloroplasts |
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Question 501 pts
Which of the following is a specialized components of the cell, is associated with the rough endoplasmic reticulum, and is responsible for making proteins.
vacuoles |
ribosomes |
golgi complex |
nucleus |
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Question 511 pts
Proteins are sorted, modified, and packaged by the _____________ and later transported to the outside of the cell.
ribosomes |
golgi bodies (golgi apparatus) |
nucleus |
mitochondria |
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Question 521 pts
Dehydration synthesis is a process of linking two smaller subunits together to form a polymer. Which of the following statements below is true of dehydration synthesis?
Oxygen is consumed. |
A water molecule is removed from the molecules. |
A water molecule is added to the molecules |
Carbon dioxide is given off. |
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Question 531 pts
Proteins are made up of _________ held together by peptide bonds.
monomers |
monosaccharides |
polymers |
amino acids |
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Question 541 pts
Which of the following gives an amino acid its properties?
NH2 |
R Group or functional group |
COOH |
H |
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Question 551 pts
The final three-dimensional shape of a protein that includes the bonding of two or more polypeptide chains is call its _____ structure.
Tertiary |
Quaternary |
Secondary |
Primary |
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Question 561 pts
How do DNA and RNA differ?
all statements are differences between DNA and RNA. |
DNA is double stranded while RNA is single stranded. |
They have different sugars. |
Thymine is present in DNA but not in RNA. |
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Question 571 pts
Which of the following is a component of a DNA nucleotide?
phosphate |
a nitrogen containing base |
All are components of a nucleotide. |
5-carbon sugar |
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Question 581 pts
Cell membranes are made up of several different types of molecules. Select the membrane molecule below that is made up of a polar region and two non-polar fatty acid tails.
transmembrane proteins |
carbohydrate chains |
phospholipids |
cell surface proteins |
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Question 591 pts
Two organelles which are believed to have once been free-living bacterial cells are ____________ and ______________.
chloroplasts and mitochondria |
golgi apparatus and endoplasmic reticulum |
ribosomes and nucleolus |
peroxisomes and lysosomes |
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Question 601 pts
The is an extensive system of internal membranes responsible for producing carbohydrates and lipids.
smooth endoplasmic reticulum |
rough endoplasmic reticulum |
nucleolus |
mitochondria |