PCB 3063 Lecture Notes - Lecture 17: Biomolecular Structure, Aptamer, Essential Amino Acid

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bluemouse986

17 Dec 2018

School

University of Florida

Department

Process Biology

Course

PCB 3063

Professor

Bond

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Document Summary

Lecture 17: the tryptophan operon is a repressible gene system, remember that an inducible system is one that is normally off that can be induced to be turned on. The regulatory region is upstream of the structural genes, and everything is controlled by the operator. Recall an operator is a promoter than controls a whole operon: when there is no tryptophan around, so transcription occurs and nothing repressors the site. However, if there is lots of tryptophan in the environment, the tryptophan itself will bind to the repressor and prevent transcription. It binds to an allosteric site on the repressor, and then the repressor can bind to the repressor gene which prevents transcription: post transcriptional regulation is also possible. This is done by conformational changes in the mrna: attenuator sites are leader sequences that are transcribed even when the operon is repressed.

Related Questions

1. The lac operon of E. coli controls the expression of genes that code for enzymes involved in lactose metabolism. The operon system is inducible in that it can be âturned onâ by the presence of lactose. Mutations to various regions of the lac operon have been discovered which affect both the control of gene expression and the function of the gene products.

These mutations include:

I ^- = produces a repressor protein that can not bind to the operator region

I ^s = produces a repressor protein that can not be removed from the operator region

O ^C = can not bind a repressor protein

Z ^- = produces a defective (non-functioning) Î²-galactosidase enzyme

( I^- are recessive to I⁺; I⁺ recessive to I^S )

Detail the functionality of the lac

operon under the following genetic and cellular conditions.

GENES	Lactose present	Repressed (yes/no)	Constitutive (yes/no)	Inducible (yes/no)
I + O + Z +	no
I + O C Z +	no
I S O + Z +	yes
I - O + Z +	yes
I S O C Z +	no

sangriadolphin65

The following test deals with the regulation of the trp operon of Escherichia coli. Two mutants of this operon are described: in mutant A, the operator region of the operon carries a point mutation so that it is unable to carry out its function; mutant B expresses a trp repressor protein unable to bind tryptophan. Review the principle of the regulation of this operon and then solve the following questions related to the behavior of the mutant cells using the options below.

A: Mutant A B: Mutant B C: Both of them D: Neither of them

a) _____ In the presence of tryptophan these cells behave like wild-type cells. b) _____ In the absence of tryptophan these cells behave like wild-type cells. c) _____ These cells are able to synthesize tryptophan.
d) _____ These cells are able to break down tryptophan.

e) _____ Tryptophan is able to act as an inducer in these cells.
f) _____ Tryptophan is able to act as a corepressor in these cells.
g) _____ The structural genes of the trp operon can be transcribed in these cells.
h) _____ In the presence of tryptophan RNA polymerase binds to the promoter of the trp operon in these cells.
i) _____ In the absence of tryptophan RNA polymerase binds to the promoter of the trp operon in these cells.
j) _____ These cells die if tryptophan is omitted from their medium.
k) _____ These mutants can be ââcuredââ by expressing wild-type trp repressor in them.
l) _____ These mutants can be ââcuredââ by transforming them with a wild-type trp operator.

1) In the wildtype (the DNA sequence most commonly found in nature) lac operon, transcription is severely down-regulated. A mutation in lacI that causes an early stop codon in the sequence (called a lacI - strain) results in an operon that has high levels of transcription of the polycistronic m-RNA. What type of regulatory protein is the LacI protein (hint: we covered this type of protein in lecture)?

The Lac regulatory protein is called a repressor. (is this correct)

2) If a bacterium with a wildtype lac operon is grown in the presence of lactose, high levels of transcription result for a while, however, eventually transcription is again down-regulated. If, on the other hand, the sugar IPTG is present (instead of lactose), transcription levels are high and remain high. What function do IPTG and lactose share? How are they differently affected by the operon product? (need help with this question)

Lactose and IPTG affected by the operon are both inducers of the Lac-Operon. (is this correct)

3) What is âepigeneticsâ? What forms of gene regulation are usually involved in epigenetic control of a trait? Why do we have such a limited understanding of epigenetic processes? (need help with this question)

Epigenetics is the study of phenotype changes that do not change the DNA sequence. Genes can be turned on and off based on environment situations of past generations, (parents or even grandparents) were exposed. Examples of some environmental factors could be diet, stress, smoking, drinking alcohol, and diseases. Histone modification and methylation are usually involved in epigenetic control of a trait. (is this correct)

PCB 3063 Lecture Notes - Lecture 17: Biomolecular Structure, Aptamer, Essential Amino Acid

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