BIOL 1108 Lecture Notes - Lecture 2: Gel Electrophoresis, Genotype Frequency, Allele Frequency

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29 Jan 2019

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Allele frequency = # of copies of an allele divided by total # of alleles in population. We are talking about diploids - 2 copies of each gene. Example problem: a population of 100 pea plants has the following genotype frequencies - 50% aa, 25% aa, 25% aa. A change in allele or genotype frequency in a population over time. No differential survival or reproductive success of individuals. No advantage to one or the other. Everyone has an equal chance at survival. Can"t pick mate based off of physical qualities. Assumptions are baselines that nothing is going to happen. Aa (genotype) = pp (genotype frequencies), aa = 2pq, aa = qq. This relationship allows us to translate between allele frequency and genotype frequency. P + q = 1 (allele frequency) Natural selection is the change allele"s frequency over time based on the particular allele"s impact on survival and reproduction.

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In a large population of an annual wild pea species, height is controlled by a single locus; DD and Dd individuals are tall, while dd individuals are short. Because the local environment is very windy, tall plants tend to get broken and survive to reproduce only half as well as well as do short plants. Mating is random with respect to height and there is no immigration or emigration. In a population of 21,000 (large enough to be considered infinite for the purposed of the Hardy-Weinberg equilibrium and natural selection models; assume this population size remains constant through the generations described in this question) adult pea plants that successfully reproduce after natural selection through differential survival has occurred, there are 7,000 DD individuals, 7,000 Dd individuals, and 7,000 dd individuals.

a) What will be the frequency of the D allele in the gametes (sperm, in pollen, and ovules) that will unite to make up the next generation?

b) What will be the genotype frequencies of DD, Dd, and dd in the seeds that are formed to start the next generation? How many seeds will there be with each genotype?

c) What will be the genotype frequencies of DD, Dd, and dd in the adults that develop from these seeds and survive to reproduce? How many adults will there be with each genotype?

d) Over a long period of time, what do you expect to happen to the D and d alleles in this population? Why?

1) Which of these probabilities are NOT independent of eachother?

The probability that a student is a sophomore and has brownhair

The probability that when you roll two dice, you will roll a 6before a 2

The probability that it will rain and the probability ofneeding an umbrella

The probability that there will be heavy traffic on BaltimoreAve and the probability you will lose your cell phone

2) We are defining evolution as a "change in allele frequenciesover time". Ironically, the focus of this lab is the Hardy-Weinbergequilibrium - conditions that, if all met, will result in NOevolution occurring. Which of the following are among theconditions that must be met for the Hardy-Weinberg equilibrium toapply perfectly to a population?

A. The population must be very large

B. Individuals must mate at random

C. The alleles must differ in their effects on survival

D. There must be free migration into and out of thepopulation

A & B

A, B, & C

3)In cats, black fur is dominant over any allele for brown fur.If a homozygous dominant cat makes kittens with a heterozygous cat,what is the probability that the first kitten will have brown fur?Report as a proportion, not percentage, e.g., .1, NOT 10%.

The EGLN1 gene helps regulate body oxygen levels. One allele His dominant over h, and helps increase fitness at high altitude(where oxygen is low). In a study of families in Tibet, researchersfound 422 HH individuals, 377 Hh, and 201 hh individuals. The studyshowed that infant mortality was lower in Hh individuals than hh,and lowest in HH individuals.
Is the Tibetan population in Hardy Weinberg Equilibrium at this H/hgene?

What is the most important factor affecting the strength ofgenetic drift?

The frequency of the rarest genotype

The size of the population

The allele frequencies

The genetic diversity in the population

aquamarinerat250

1. Characters that show a continuous range of variation, such as height and eye color, usually are controlled:

a.	by a single gene with two alleles that are codominant.

b.	by many genes with an additive effect.

c.	by epistatic interactions between two genes.

d.	mainly by the environment, with only a small genetic component.

2. In humans, red-green colorblindness is inherited as a sex-linked recessive trait. In order for a woman to be red-green colorblind, which of the following statements must be true.

a.	Her mother must be red-green colorblind.

b.	All of her brothers must be red-green colorblind.

c.	Her father must be red-green colorblind.

d.	All of the above statements must be true if a woman is red-green colorblind.

3. The x-ray crystallography data collected by Rosalind Franklin suggested to Watson and Crick that the:

a.	structure of DNA is a double helix.

b.	two strands of the DNA molecule are joined by hydrogen bonds between the bases.

c.	four bases within DNA pair in a specific way.

d.	two strands of the DNA molecule are joined by covalent bonds between the bases.

4. In the genetic code, _________ one amino acid.

a.	one nucleotide specifies

b.	two nucleotides specify

c.	three nucleotides specify

d.	four nucleotides specify

5. During Meiosis I, a homologous pair of chromosomes may not separate, resulting in daughter cells that have extra chromosomes or are missing chromosomes. This can lead to genetic disorders, including Down Syndrome. This phenomenon is called:

a.	independent assortment.

b.	nondisjunction.

c.	segregation.

d.	crossing over.

6. You are a human geneticist studying the incidence of retinitis pigmentosa in the residents of Tristan de Cunha, a group of small islands in the middle of the southern Atlantic Ocean. The allele for retinitis pigmentosa, which causes a form of blindness, is inherited as an autosomal recessive. You have determined that the frequency of this allele (r) in the population is 0.4 (40%). Using the principles of the Hardy-Weinberg rule, you would estimate the frequency of individuals who are heterozygous for this allele (Rr) in the population to be:

a.	0.16 (16%)

b.	0.24 (24%)

c.	0.36 (36%)

d.	0.48 (48%)

7. Natural selection acts at the level of the:

a.	phenotype.

gene.

c.	population.

d.	nucleotide.

8. You are working with pea plants, trying to recreate the experiments that Mendel performed. You are doing a dihybrid cross with a plant that is heterozygous for both seed shape and seed color, with the genotype RrYy. Which allelic combinations would you expect to find in the gametes produced by this plant?

a.	This plant would produce only RY and ry gametes.

b.	This plant would produce only RrYy gametes.

c.	This plant would produce RY, Ry, rY, and ry gametes.

d.	You cannot determine which gametes this plant can produce without knowing the genotypes of its parents.

9. Biochemist Erwin Chargaff found that in DNA there is a special relationship between the four bases that we now call Chargaff's rule. His observation was that, in an organism's genome the:

a.	percentage of A nucleotides = the percentage of T nucleotides, and the percentage of C nucleotides = the percentage of G nucleotides.

b.	four bases all occur in an equal frequency (25%) within each organism.

c.	percentage of A nucleotides = the percentage of G nucleotides, and the percentage of C nucleotides = the percentage of T nucleotides.

d.	genetic material is composed of proteins, not DNA.

10. During DNA replication:

a.	each strand of the double helix acts as a template for the synthesis of a new strand.

b.	the enzyme DNA polymerase adds nucleotides to the strand being synthesized.

c.	the bases A,C,G and T are required.

d.	All of the above are true of DNA replication.

11. During translation, amino acids are joined by peptide bonds to make polypeptides. The formation of these peptide bonds is catalyzed by:

12. If an allele (R) at a gene with two alleles shows complete dominance, individuals with the genotypes ______ will have the same phenotype.

a.	RR and rr.

RR and Rr

Rr and rr

d.	Each of the three possible genotypes will have a different phenotype.

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BIOL 1108 Lecture Notes - Lecture 2: Gel Electrophoresis, Genotype Frequency, Allele Frequency

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