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Biology 2382B Lecture Notes - Glycosylphosphatidylinositol, Transmembrane Domain, Lipid Bilayer

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School
Western University
Department
Biology
Course
Biology 2382B
Professor
Robert Cumming

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Document Summary

With the exception of needing phospholipids to form semi-permeable closed compartments, membrane proteins carry out the biological functions of membranes. Integral: part of the membrane, when part of the membrane are potentially going through the membrane their orientation will always be the same. Lipid-linked: linked to lipids that are already present on the membrane. Peripheral: proetins that are not directly linked to the plasma membrane, are not binded directly to the membrane bind to a protein on the plasma membrane and in doing so is linked to it. Asymmetric: specifically oriented it will always be the same orientation! Three distinct domains: cystopalsmic (hydrophillic, transmembrane (hydrophobic, exoplasmic (hydrophilic) Transmembrane domain: hydrophobic secondary or tertiary structures that span the lipid bilayer. Alpha helicies a row of amino acids that will span the plasma membrane (must be hydrophobic) (20-25 amino acids) Arg and lys (charged aas) near cytosolic side interact with polar head groups.

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Related Questions

Hybridomas are the useful result of a fusion between _______________ and _________________ to obtain hybrid cells that can proliferate and produce _________________ against specific ________________.
myeloma cells; B lymphocytes; monoclonal antibodies; epitopes
myeloma cells; T lymphocytes; polyclonal antibodies; antigen
T lymphocytes; B lymphocytes; monoclonal antibodies; antigen

T lymphocytes; B lymphocytes; polyclonal antibodies; epitopes
With respect to mammalian cell culture, which of the following statements is true?
Media used for cell growth contain proteases and a divalent cation chelator to help cells adhere to the surface.
During the establishment of a cell line, senescence is the last stage of the cell's life.
Rodent cells cultures undergo spontaneous transformation with similar frequency to human cell cultures.
Embryonic cell lines do not undergo senescence nor do they have a finite life span.
Epithelial cells have distinct surfaces. Which of these surfaces tends to be involved in secreting proteins out of the cell and into the bloodstream?
apical
basal
All of the answers are correct.
lateral
Which of the following is NOT true of phospholipid bilayers?
Phospholipid bilayers separate the cell from the exterior environment as well as from compartments within the cell.
The interior of phospholipid bilayers is a highly hydrophobic environment.
Membrane budding requires transient breakages in the bilayer membrane.
The chemical properties of phospholipids lead to the spontaneous formation of bilayers.
Which of the following is true regarding membrane proteins?
All peripheral membrane proteins contact the lipid bilayer by covalent attachment to the hydrophilic head groups on membrane lipids.
Beta strands can assemble into a membrane-spanning barrel structure.
Lipid-anchored membrane proteins always face the cell exterior.
A protein with six hydrophobic helices is most likely a lipid-anchored membrane protein.
Which of the following statements is NOT true?
The three types of lipid anchors responsible for tethering proteins to the bilayer are acylation, prenylation, and ubiquitinylation.
Movement of lipids from the cytoplasmic to the exoplasmic leaflet of the membrane bilayer requires specialized transport proteins called flippases.
Glycoproteins are the basis for blood type compatibility between donor and receiver.
Glycoproteins are always oriented so that the carbohydrate moieties are exoplasmic.

True or False? True False
1. Proteins rapidly pass artificial membrane (liposome).--------------------------------------------------------------------------------------( ) ( )
2. Amphiphatic detergent such as SDS spontaneously forms bilayer inwater. ------------------------------------------------------------( ) ( )
3. Cholesterol does have a hydrophilic head and hydrophobic tail.-------------------------------------------------------------------------( ) ( )
4. Fat molecules are one of the major components of the plasmamembrane.------------------------------------------------------------- ( ) ()
5. Phospholipid molecules such as phosphatidylcholine spontaneouslyform bilayer. ----------------------------------------------------( ) ( )
6. Flippase facilitates lateral movement of phospholipids withinthe plane of the membrane.----------------------------------------- ( ) ( )
7. Glycolipids make bilayer less permeable to small water solublemolecules.----------------------------------------------------------- ( ) ()
8. Membrane inner leaflet is enriched with phosphatidylcholine,Sphingomyelin, and Glycolipid. -----------------------------------( ) ( )
9. Plasma membrane proteins can have an enzyme activity.--------------------------------------------------------------------------------( ) ( )
10. A single pass membrane protein must have an amphiphatic alphahelix.-------------------------------------------------------------- ( )( )
11. Plasma membrane proteins can be linked to a lipid molecule atthe outer leaflet of the plasma membrane. --------------------- ( )( )
12. The lateral motility of membrane proteins can be restricted bytight junctions.------------------------------------------------------ ( ) ()
13. Channel proteins have specific binding sites for ions and thusslower than carrier proteins.--------------------------------------- ( ) ( )
14. An antiport would function as a symport if its orientation inthe membrane were reversed. ---------------------------------------( ) ( )
15. A transmembrane pore can be formed by multiple amphipathicalpha helices. ----------------------------------------- ( ) ()
16. Porin proteins form water-filled channels in the outer membraneof a bacterium and are mostly composed of beta sheets. ---- ( ) ()
17. Glucose uniporters localize at the apical side of theintestinal epithelium.------------------------------------------------------------ ( ) ()
18. GAP junction is a selective pore for anions.-----------------------------------------------------------------------------------------------( ) ( )
19. A voltage-gated Na+ channel adopts only two conformationstates: open and closed.----------------------------------------------- ( ) ( )
20. Voltage gated K+ channel opens faster than the Voltage gatedNa+ channels.-------------------------------------------------------- ( ) ()
21. Opening of chloride channel at the synapse will help to fire anaction potential.------------------------------------------------------ ( ) ()
22. The nuclear pore complex forms a gate through which moleculespass the nucleus uni-directionally. -------------------- ( ) ()
23. A completely folded protein is imported into a mitochondrionthrough a large non-selective pore.--------------------------------- ( ) ( )
24. ER signal sequence contains multiple lysine and arginineresidues.----------------------------------------------------------------------( ) ( )
25. The plasma membrane is a sorting station of inward endocyticpathway.---------------------------------------------------------------- () ( )
26. The trans Golgi functions as a sorting station of outwardsecretory pathway.----------------------------------------------------------- ( ) ()
27. Vesicles budding from ER are coated with Clathrin.----------------------------------------------------------------------------------------( ) ( )
28. RabGTPases and tethering proteins are the major specificitydeterminant of vesicle transport system. --------------------------( ) ( )
29. v-SNARE proteins are one of the tethering proteins.------------------------------------------------------------------------------------( ) ( )
30. In secretory cells, the constitutive and regulatory pathways ofexocytosis diverge at the cis Golgi network. ------------------ ( )( )
31. Many proteins are posttranslationally glycosylated at tyrosineresidues in the ER.------------------------------------------------- ( ) ( )
32. Cells import LDL molecules exclusively through pinocytosis.-------------------------------------------------------------------------( ) ( )
33. Cells recycle LDL receptors from lysosome to the plasmamembrane.----------------------------------------------------------------- () ( )
34. Phagosomes fuse with late endosome.------------------------------------------------------------------------------------------------------( ) ( )
35. Small vesicles from ER near the plasma membrane can fuse withthe plasma membrane upon bypassing Golgi apparatus. -- ( ) ()
36. If a Sec mutant showed an accumulation of newly synthesizedproteins at ER,
then the Sec gene is likely a component of vesicle-buddingmachinery of trans-Golgi network.------------------------------------ ( ) ( )
37. A signal recognition particle is a single pass trans-membraneprotein of the ER membrane.---------------------------------------- ( ) ( )
38. Typical animals cells display higher levels of intracellularsodium than extracellular compartments.------------------------------ ( ) ( )
39. Typical animals cells display higher levels of intracellularchloride than extracellular compartments.----------------------------- ( ) ( )
40. The Na-K Pump is a GTPase that can adopt active and inactiveconformational states.----------------------------------------------- ( ) ( )
1. Phospholipase
C-­-ß
produces
phosphatidylinositol
3,4,5-­-trisphosphate
and
diacylglycerol.
(
)
(
)
2. PDGF
activates
GPCR.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
3. Rho
is
an
example
of
heterotrimeric
G
proteins.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­-
(
)
(
)
4. All
members
of
the
G
protein
coupled
receptors
interact
with
small
GTPase
Ras.
-­--­--­--­--­--­--­--­--­--­-
(
)
(
)
5. Adrenaline
is
an
example
of
the
ligands
for
the
RPTK
family.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
6. Ras
GEF
activates
RPTK.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
7. PH
domain
containing
proteins
bind
to
activated
EGFR.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
8. Ligands
for
GPCR
proteins
induce
dimerization
of
the
receptor.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
9. Grb2
is
an
adaptor
protein
that
binds
to
a
phospho-­-tyrosine
residue
of
activated
RPTK
through
a
PH
domain.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
10. When
a
cell
is
expressing
a
large
number
of
dominant
negative
EGFR
proteins,
an
introduction
of
a
constitutively
active
Ras
mutant
will
allow
EGF
signaling.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
11. PI3K
generates
phosphatidylinositol
3,4,5-­-trisphosphate
from
IP3.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
12. Calcium
inhibits
PKC.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
13. cAMP
activates
PKA.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
14. The
MAP
kinase
ERK
inhibits
MAP
kinase
kinases.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­-
(
)
(
)
15. cAMP
is
an
example
of
a
first
messenger.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
16. All
7-­-Transmembrane
receptors
are
G
Protein
Coupled
Receptors.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
17. Both
Ga
and
Gß
subunits
of
the
heterotrimeric
G
protein
can
mediate
GPCR
signaling.
-­--­--­-
(
)
(
)
18. Both
Ga
and
Gß
subunits
of
the
heterotrimeric
G
protein
have
GTPase
activity.
-­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
19. The
Gas
subunit
of
the
heterotrimeric
G
protein
suppresses
the
function
of
Adenylyl
cylase.
(
)
(


Which of the following Scientist(s) described the contemporary“fluid- mosiac”model of the plasma Membrane
Davson and Nicholson
Nicholson and Danielle
Singer and Davson
Nicholson and Singer
Answer:_________________________________________________________________

________________________________________________________________________



The “fluid-mosaic” model of the PM differ from the first proposedmodel in that:
The first model did not have cholesterol
The first model was devoid of some lipids
The first model was devoid of some proteins
The first mode was devoid of some carbohydrates
Answer:_________________________________________________________________

________________________________________________________________________


Which is most likely to be a membrane receptor protein?
A glycosylated protein containing three hydrophobic regions
A glycosylated protein devoid of hydrophobic regions
A protein containing hydrophobic regions but devoid of sugars
A glycosylated protein devoid of hydrophilic regions
Answer:_________________________________________________________________

________________________________________________________________________


Which secondary structures of proteins are formed within thePM?
Alpha-pleated sheets
Beta-pleated sheets
Alpha-helicies
Beta-helicies
Answer:_________________________________________________________________

________________________________________________________________________

Intergal proteins project
entirely outside of the bilayer on the extracellular surface
entirely through the membrane having N- and C- terminusexposed.
entirely outside of the bilayer on the cytoplasmic surface
outside bilayer but covalently linked to lipids withinmembrane
Answer:_________________________________________________________________

________________________________________________________________________




Which is the driving force which maintains the lipid bilayer?
Van der waals forces
Hydrophobic interactions
Hydrophilic interactions
Ionic interactions
Answer:_________________________________________________________________

________________________________________________________________________

What affect do lipids with double bonds in their nonpolar tailshave on the integrity of the PM?
They increase the fluidity of the PM
They decrease the fluidity of the PM
They allow more lipids to pack tighter in the membrane
They cause the membrane to become less stable
Answer:_________________________________________________________________

________________________________________________________________________

As the fluidity of the PM increases, what happens to theentropy?
increases
decreases
stays the same
none of the above
Answer:_________________________________________________________________

________________________________________________________________________


The consistency of membranes at various temperatures can beunderstood using the Margarine and Butter analogy. Butter containslonger saturated chains of fat derived from animals while Margarinecontains short polyunsaturated fats derived from corn oil. Whentaken directly from the refrigerator, Margarine can be spread withease while the Butter does not. What conclusion should you drawregarding how the composition of membrane lipid regulate thefluidity of the PM?
Longer chains exhibit more double bonds and increases contact oflipids
Longer chain exhibit fewer double bonds and increases contact oflipids
Shorter chains exhibit more double bonds and increases contact oflipids
Shorter chains exhibit more double bonds and increases contact oflipids
Answer:_________________________________________________________________

_____________________________________________________________________
Which PM lipid covalently anchors proteins?
Phosphoglycerides
Sphingolipids
Cholesterol
Triglycerides
Answer:_________________________________________________________________

________________________________________________________________________

Which PM lipid is the least amphipathic?
Phosphoglycerides
Sphingolipids
Cholesterol
Triglycerides
Answer:_________________________________________________________________

________________________________________________________________________


Which of the following is not a function of the PM?
Signal Transduction
Energy Transduction
Regulates which molecules enters and exits cell
Site of Biochemical events such as production ofmacromolecules
Answer:_________________________________________________________________

________________________________________________________________________

Which two PM phospholipids have negative charges?
Phosphatidylcholine and Phosphatidylethanolamine
Phosphatidylethanolamine and Phosphatidylserine
Phosphatidylinositol and Phosphatidylserine
Phosphatidylserine and Phosphatidylcholine
Answer:_________________________________________________________________

________________________________________________________________________

Which PM lipid is the only true glycolipid?
Phosphatidylcholine
Phosphatidylethanolamine
Sphingolipid
d. Cholesterol
Answer:_________________________________________________________________

________________________________________________________________________


Which is NOT a function of the Plasma Membrane
It serves as a barrier allowing all molecules to enter cell
It serves as a site for energy and signal transductions
It is composed of lipids, proteins, and carbohydrates
It compartmentalizes the cells
Answer:_________________________________________________________________

________________________________________________________________________


Cholesterol, which is not present in bacteria, controls the PMfluidity of animal cells. Which is the CORRECT orientation of thehydroxyl group of the four-member ring of cholesterol in thePM.
The hydroxyl group is oriented inside the membrane
The hydroxyl group is oriented toward the cytoplasm
The hydroxyl group is oriented toward other cholesterolmolecules
The hydroxyl group is oriented toward the membrane surface
Answer:_________________________________________________________________

_____________________________________________________________________
PM carbohydrates are oriented:
Inside the membrane
Toward the cytoplasm
Toward other carbohydrate molecules
Away from the cytoplasm and inside organelles
Answer:_________________________________________________________________

________________________________________________________________________



Sugars constituents various on red blood cells depending on bloodtype, why would giving someone the wrong blood type be fatal?
Blood groups differ in the levels of hemoglobin they carry
The body would view the sugars as antigens and form antibodiesagainst them.
Because of the incompatible sugar arrangement, the blood would notflow to the heart properly.
The foreign sugar sequences will attack to the sugar sequences onnormal cells.
Answer:_________________________________________________________________

________________________________________________________________________


NaCl most likely get into cells by which of the followingmethods?
Diffusion
Facilitated Transport
Osmosis
Active Transport
Answer:_________________________________________________________________

________________________________________________________________________


Sufferers of type II diabetes (adult onset) have normal insulinlevels but no target cell response due to deficiency in receptorsfor insulin. Which type of transport is missing?
Diffusion
Facilitated Transport
Osmosis
Active Transport
Answer:_________________________________________________________________

________________________________________________________________________

The movement of molecules against a gradient refers to which typeof transport?
Diffusion
Facilitated Transport
Osmosis
Active Transport
Answer:_________________________________________________________________

________________________________________________________________________


Which is the correct exchange of sodium and potassium in the Na/Kpump of cells?
three sodium for three potassium
two sodium for three potassium
three sodium for two potassium
two sodium for one potassium
Answer:_________________________________________________________________

________________________________________________________________________


This type of transport is important to cells because they receivetheir oxygen and rid themselves of carbon dioxide by thismethod:
Diffusion
Facilitated Transport
Osmosis
Active Transport
Answer:_________________________________________________________________

________________________________________________________________________

Maintaining membrane fluidity is important to cells because?
Cells are able to maintain proper function at differenttemperatures
Cells can break down membranes lipids very quickly when energy isneeded
Larger molecules can pass through the membrane when fluidity isincreased
The membrane fluidity helps to maintain the positions ofglycoproteins and glycolipids
Answer:_________________________________________________________________

________________________________________________________________________

Scientists agreed that the plasma membrane was the site ofbiochemical events when peroxide was broken to produce bubblescontaining?
water
hydrogen
oxygen
carbon dioxide

Answer:_________________________________________________________________

________________________________________________________________________