BIOLOGY 1A03 Lecture Notes - Lecture 13: Embryonic Stem Cell, Dna Binding Site, Chromatin

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9 Mar 2016

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BIOLOGY 1A03 Full Course Notes

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All embryonic stem cells are idenical at one point and difereniate into ~200 diferent types: cells will have diferent fates based on the signals that are exchanged and which genes are switched on or of at speciic imes. The variaion in cell types depend on the difereniaion that occurred from common stem cells during the early developmental cascade: transcripion factors. Proteins containing structures that allow them to interact with the dna double helix, control transcripion and contribute to gene regulaion. Important for determining the pathway for a speciic cell type and what it difereniates into. Transcripional regulaion in prokaryotes and eukaryotes are similar: proteins that can acivate/repress transcripion, rna polymerase binds to promoters. Transcripional regulaion in eukaryotes: rather than having operons that cluster together genes with similar funcions, every gene in eukaryotes has its own promoter and enhancer, dna is organized into highly compact chromain. Genes within this ightly wound heterochromain are usually expressed.

Related Questions

1. Which cellular processes occur as a consequence of differential control of gene expression in eukaryotic cells?

a) Cell Differentiation

b) Differential Translation

c) Differential Polymerization

d) Differential DNA Replication

e) Differential tRNA Degradation

2) Multicellular organisms are comprised of a variety of cells with different morphologies and different functions. Which is the underlying mechanism that leads to the generation of diverse cell in one organism?

a) The expression of all genes in all cell types.

b) The duplication of the genome in certain cell types.

c) The elimination of specific group of genes from different cell types.

d) The differential expression of particular sets of genes required for a particular cellular phenotype

e) All of the above

3) Which of these statements defines paracrine cell signaling?

a)		A messenger molecule released into the blood stream to bind to a receptor on a cell far away from the release site.
b)		A messenger molecule released by a cell into the extracellular space that binds to receptors on the surface of the same cell.
c)		A messenger molecules released by a cell into the extracellular space that travels short distances to bind to a receptor in a nearby cell.
d)		A messenger molecule release by a tissue into the lumen of an organ that diffuse to bind to receptors far away from the release site.
e)		All of the above.

4) Which effect has the binding of the ligand to a G-protein coupled receptor on intracellular G-protein?

a)		ATP is hydrolyzed, activating phosphorylation
b)		GTP is exchanged for GDP on the G protein, inactivating the G protein
c)		GDP is exchanged for GTP on the G protein, activating the G protein
d)		GMP is released from the G-protein, inactivating the receptor
e)		None of the above

coffeehippopotamus191

Cell Biology (#1-5)

1) What does a non-synonymous DNA mutation cause?

a) No amino acid change

b) A change in the reading frame of the mRNA

c) The substitution of an amino acid

d) Creates a premature termination codon

e) All of the above

2) What does a non-sense DNA mutation cause?

a) No amino acid change b) Alters the normal reading frame of the mRNA

c) The substitution of an amino acid

d) Creates a premature termination codon

e) All of the above

3) If you sequence the genome of 100 cells from different tissues of the same multicellular organism. How do you expect the sequences to be?

a) 10% identical c)100% identical

b) 50% identical d) 100% different e) will depend on the tissue selected

4) Multicellular organisms are comprised of a variety of cells with different morphologies and different functions. Which is the underlying mechanism that leads to the generation of diverse cell in one organism?

a) The expression of all genes in all cell types

b) The duplication of the genome in certain cell types

c) The elimination of specific group of genes from different cell types

d) The differential expression of particular sets of genes requires for a particular cellular phenotype

e) All of the above

5)You are growing bacteria which can use lactose and glucose. The culture medium has lactose, which induces transcription of the enzymes required to use lactose. If you add glucose to the medium. What do you expect to happen?

a) The bacteria will keep using lactose

b) The bacteria will shut down the Lac operon and use glucose

c) The bacteria will stop growing

d) The bacteria will die

e) The bacteria will use both lactose and glucose

salmoneagle868

Chapter 10

1.Outline the history of our knowledge on DNA up to Watson and Crick. What were the main contributions made by each researcherâs key experiment?

2.Explain the setup of the Hershey and Chase experiment, what would the results have been if protein was the genetic material?

3.Draw the structure of a DNA nucleotide, labeling each main component correctly. How does an RNA nucleotide differ?

4.If a section of double stranded DNA contains 19% Adenine, how much Thymine is present?

5.You are a researcher studying the genetic basis of heart attacks and have been working to determine the expression levels of different genes that might contribute to cancer formation. You obtain the DNA methylation status of five genes of interest (the data are shown in the table below). The plus (+) sign indicates the level of DNA methylation; more plus signs correlates with increased methylation levels.Based on this information which genes would you predict to have the highest rate of transcription?

Gene	Methylation levels
1	++
2	+++++
3	+++
4	++
5	+

What are the characteristics of the 3 main DNA forms?

Chapter 11

What are the different types of chromatin?

What are the structures and important roles for telomeres and centromeres?

What are the differences found between eukaryotic chromosomes and mitochondrial?

Chapter 12

Explain each of the different models of replication.

If you grow a culture of bacteria in media with radioactive nucleotides so that all DNA in the cells include radioactive nucleotides and then place the bacteria in new non radioactive media. After two rounds of replication what proportion of the DNA molecules will contain radioactivity?

Summarize the similarities and differences between rolling-circle replication, theta replication and linear eukaryotic replication.

What are the functions of the different DNA polymerases found in eukaryotic cells?

Draw a replication fork and include all key components and orientations. (Leading/lagging strands, DNA helicase, RNA primer and DNA gyrase)

What is the Holliday model of recombination and what are the necessary steps?

Chapter 13

What are the different types of RNA and what roles do they play?

Describe the properties and functions of each of the RNA polymerases and how they differ depending on the organism.

Describe in detail the process and mechanisms of transcription in both prokaryotes and eukaryotes.

Chapter 14

What are the primary purposes of each of the three post transcriptional modifications that occur in eukaryotic cells.

What is alternative splicing and what role does it play in the cell?

How is ribosomal RNA processed after transcription?

How do siRNA and miRNA work, describe/draw out the process in detail.

BIOLOGY 1A03 Lecture Notes - Lecture 13: Embryonic Stem Cell, Dna Binding Site, Chromatin

BIOLOGY 1A03 Full Course Notes

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