FILM-6010 Lecture Notes - Lecture 4: Beta Sheet, Membrane Protein, Cell Membrane

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cerisegiraffe408

3 Jun 2020

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You can have aggregates of different proteins. Aggregates occur because of an exposed hydrophobic region. They bind to molecules that are required for cells. They can bind to other macromolecules that are essential for cells. The different between amyloid fiber is that amyloid are distinguished by. You can also start to see aggregation of proteins to higher order structures. You can also see that proteins can assemble into a divine structure. Amyloid fiber nothing more than protein polymers. An infectious protein what is this. formation of structure. The cross-beta filament is that the beta sheets run perpendicular to the axis of the fiber. A very large number of proteins is sequence independent is because there are intermolecule hydrogen bonds. These hydrogen bonds are created in the peptide backbone. This infectious protein has the ability to form an amyloid structure and allow the misfolding of a normal protein. A filament comes into contact with a normal protein.

Related Questions

1)Describe the directions in which the two motor proteins, kinesin and dynein, travel along a microtubule. Which of the two proteins moves materials towards the Golgi and which moves materials away from the Golgi? Lastly, what is the speed of kinesin dependent on?

2)What are microfilaments crucial for? How do they self-assemble? Which end do they prefer to elongate from?

3)Describe what types of filaments are in each of the bands of the sarcomere. As a muscle fiber is shortened, describe what happens to each of the bands in the sarcomere as the Z lines move inwards.

4)Describe the role of calcium ions in muscle contraction.

5)List the various types of actin-binding proteins

6) A. What are 3 functions of the cytoskeleton?

B.What are the three filaments that compose the cytoskeleton, and what are they composed?

7)How do they see the internal structures of cells in the microscope? What do proteins get labeled with?

8)Myosin II action (Figure 9.61) differs from that of kinesin (Figure 9.15) in that one of the kinesin heads is always in contact with a microtubule, whereas both myosin heads become completely detached from the actin filament. How are these differences correlated with the two types of motor activities in which these proteins engage?

9)If a myofibril were pulled so that the sarcomeres increased in length by approximately 50 percent, what effect would you expect this to have on the contractile ability of the myofibril? Why? What effects would this have on the H, A, and I bands?

10)Because cytoplasmic vesicles are seen to move in both directions within an axon, can you conclude that some microtubules are oriented with their plus end facing the axon terminus and others oriented with the opposite polarity? Why or why not?

16.Globular proteins fold up into compact, spherical structures that have uneven surfaces. They tend to form

multisubunit complexes, which also have a rounded shape. Fibrous proteins, in contrast, span relatively large

distances within the cell and in the extracellular space. Which protein is not classified as a fibrous protein?

(a)elastase (b)collagen (c)keratin (d)elastin

17.You have two purified samples of protein Y: the wild-type (nonmutated) protein and a mutant version with a

single amino acid substitution. When washed through the same gel-filtration column, mutant protein Y runs through

the column more slowly than the normal protein. Which of the following changes in the mutant protein is most likely

to explain this result?

(a)the loss of a binding site on the mutant protein surface through which protein Y normally forms dimers

(b)a change that results in the mutant proteinâs acquiring an overall positive instead of a negative charge

(c)a change that results in the mutant proteinâs being larger than the wild-type protein

(d)a change that results in the mutant proteinâs having a slightly different shape from the wild-type protein

18.Which of the following statements is true?

(a)Disulfide bonds are formed by the cross-linking of methionine residues.

(b)Disulfide bonds are formed mainly in proteins that are retained within the cytosol.

(c)Disulfide bonds stabilize but do not change a proteinâs final conformation.

(d)Agents such as mercaptoethanol can break disulfide bonds through oxidation.

19.Proteins bind selectively to small molecule targets called ligands. The selection of one ligand out of a mixture of

possible ligands depends on the number of weak, noncovalent interactions in the proteinâs ligand-binding site. Where

is the binding site typically located in the protein structure?

(a)on the surface of the protein (b)inside a cavity on the protein surface

(c)buried in the interior of the protein (d)forms on the surface of the protein in the presence of ligand

thanks

The bacterium E. coli, which is a major model system for the study of genes and DNA, has a singular circular chromosome of about 4x106 bp. In contrast, human diploid cells have __1__ chromosomes, of __2__ different types (donât forget that the X Â¹ Y!). The total amount of DNA found in a haploid cell such as a sperm or egg is called the organismâs âC-valueâ; the human C-value is __3__.

Also in contrast to the E. coli circular chromosome is the fact that eukaryotic chromosomes are not circular, but instead are __4__. Eukaryotic chromosomes are complexed heavily with protein to form a DNA-protein complex generically called __5__. The proteins found can be considered to fall into two general classes: __6__ and __7__. The first class is made up of 5 major proteins called __8__, __9__, __10__, __11__, and __12__. On a weight to weight basis, these proteins make up about __13__% of the total mass of a chromosome. Since these proteins must associate relatively non-specifically with DNA, they are rich in the basic amino acids __13__ and __14__, which gives the proteins a net __15__ charge.

One goal of packaging the DNA into chromatin is to compact the genome so it will fit into a nucleus. The basic unit of chromatin structure is the __16__, which has __17__ base pairs of DNA wrapped around a âcore particleâ composed of __18__ copies each of the core histones. Each nucleosome is separated by a stretch of âlinkerâ DNA so that the repeating unit is approximately 200 bp. Lets do a little arithmetic: If we consider that the nucleosome is approximately __19__ nm in diameter, that there is about 200 bp in this structure, and that 200 bp of DNA would normally occupy __20__ nm if stretched out straight (recall that each base is spaced about 0.34 nm from the next), we can see that the nucleosome alone allows for a __21__-fold compaction ratio.

The nucleosome structure is further compacted by histone __22__, which is not a part of the core particle. Instead, this histone __23__ (does what?) to cause the nucleosomal 10 nm fiber to condense into a higher-order structure referred to as the __24__ nm fiber. In the nucleus, chromosomes do not just float around freely: they are tethered to a proteinaceous structure called the __25__ at specific DNA regions called âSARsâ, which stands for __26__. SARs are rich in topoisomerases, to allow the winding and unwinding of the DNA that accompanies replication and transcription to occur, despite this constraint.

The 30 nm fiber discussed above is the form in which transcriptionally active DNA is believed to exist in the nucleus; however, further condensation leads to a highly condensed inactive form called __27__; in this terminology, the active form is referred to as __28__. The inactive condensed form can be divided into two types: one type is essentially invariant between cell types, and since it is âon all t timeâ, it is referred to as __29__. The other type comes and goes, depending on the expression of the genes present in that region of the chromosome; it is referred to as __30__.

Eukaryotic chromosomes carry the genes, of course, but also have other functional regions. One such region is the place where the spindle apparatus attaches during mitosis and meiosis; this region of the chromosome is called the __31__. Another important part of the linear eukaryotic chromosome is the ends; these are called __32__. In humans, the end of each chromosome is composed of many repeats of the short sequence __33__. One more type of functional region on each chromosome is the place where DNA replication starts; in humans, each chromosome has several of these __34__. Thus, eukaryotic chromosomes carry several different types of functional sequences, which together allow for their __35__ during S phase, __36__ during mitosis and meiosis, and the __37__ of their genes

FILM-6010 Lecture Notes - Lecture 4: Beta Sheet, Membrane Protein, Cell Membrane

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