ENG 4339 Lecture Notes - Lecture 3: Pymol, Tcl, Hemoglobin
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See the information contained in the pdb file on the pymol tcl/tk gui. 1. 2 (open the pdb file with a txt program) The pymol > command allows to select individual objects hide cartoon, chain a show ribbon, chain a set ribbon_width, 10. With the last command the thickness of ribbon is increasead hide cartoon, chain b show spheres, chain b hide cartoon, chain c show sticks, chain c. Biological molecules are composed by atoms which are assembled o residues. The residues are grouped in chains, the chains in segments, and the different segments inthe final model. /model/segment/chain/residue/atom select aaa, chain a & resi 10. With this command you are selecting residue 10 within the chain a delete all objects. On the pymol tcl panel (top panel), in display option choose the option sequence . With this action you can select residues by the name. Close de session and open again the pdb file.
