BIOC12H3 Lecture Notes - Lecture 3: Archaea, Titration, Electric Field

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Lec03 primary structure of proteins: amino acids, hydrophobic, hydrophilic c. ionize d. salt bridges basic structure of amino acid. 2. side chain a. r group: alpha carbon a. carboxyl group, alpha amino group. L and d serine cannot be superimposed b. left and right hand cannot be superimposed amino acids side chains. 2. chemical classes: aliphatic a. i. do not contain any aromatic rings a. i. 1. may contain ali-cyclic rings, aromatic b. i. containing aromatic rings c. sulfur containing, alcohols, bases f. acids, amides. 1. shortest to longest: glycine alanine valine leucine isoleucine a. i. longer the chain the more hydrophobic it is stereoisomers of isoleucine. 2. considered secondary amino group a. imine (imino amino acid) a. i. containing a c=n double bond. 3. ring restricts protein geometry and often introduces changes in direction of the peptide chain folding aromatic r group amino acids: hydrophobic characteristics, but both tyrosine and tryptophan also have hydrophlic properties because of oh and.

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