BIOC 2580 Lecture Notes - Lecture 2: Deprotonation, Acid Dissociation Constant, Side Chain

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Free amino acids are weak electrolyte due to their amino and carboxylate groups. Normal biochemical processes occur close to ph 7 (physiological ph is 7. 0-7. 4) Groups such as carboxylate and amino groups gain or lose h+ depending on availability of h+ in solution ph expresses availability of h+: ph = -log[h+: at ph=7, [h+]=10-7m. The henderson-hasselbalch equation relates ph, pka and the state of ionization of a given group ph=pka+log [deprotonated]/[protonated] The ionization state of the -carboxylate group at ph 7. Typical pka=2. 4 0. 5 for amino acid -carboxylate: cooh coo- + h, ie. ph-pka= log [a-][ha} The vast majority of molecules exist at ph 7 as carboxylate (coo-), not as carboxylic acid (cooh) The ionization state of the -amino group at ph 7. + nh2 + h: nh3, i. e [nh2]/[nh3. The vast majority of molecules exist as protonated nh3. Charged state of amino acids at neutral ph.

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